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I tried to work on the Harvetta model, in which the LB and UB on the reactions are -1,000,000 and 1,000,000. I was not even able to load the .mat file of the model using jupyter notebbok due to this e…
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Hi, I am thinking to integrate the protein structure analysis with quantitative genetics analysis. To do that, I am trying to understand folding energy better.
May I ask another stupid question, pl…
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Hello,
I read the documentation of Arriba and it's very well explained thank you but the part about reads supporting a fusion is unclear for me.
I'm looking for the **Junction** and **Spanning**…
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I was reading the [paper](http://cseweb.ucsd.edu/~mbtaylor/papers/Taylor_DAC_BaseJump_STL_2018.pdf) and noted the following ...
(9) Testing Suite. The STL shall have unit tests for each module.
…
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Hi all, thanks for this great package.
I have two builds on different computers - on a Mac linked against RDKit, and on Ubuntu linked against OpenBabel.
Using the OpenBabel build, this command r…
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Running Trinity 2.10.0 on a HPC cluster at the University of Hawaii.
### I am using this command:
Trinity --trimmomatic --seqType fq --CPU 16 --max_memory 118G --samples_file /home/bjarne/Macn…
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Hi,
I’ve been benchmarking SVClone on our in-house cell line purity ladders, where each tumor sample is an in-silico mix of tumor and normal (i.e., known purity/ploidy). I’ve been reviewing the re…
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Dear Vadim,
I encountered an issue with the newest DIA-NN version. After the library development step, DIA-NN exits and i get a notification window with the corresponding message. I already tried a…
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Hi trinity community:
I've struggled to assemble a large RNA-seq dataset for a while. Trinity correctly runs and finishes when I use the test data included with installation, but it can't make it …
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Decision to go with Hail after [analysis](https://docs.google.com/document/d/19jkCrvByI-Z5BAHpYCTl9doP9jrPS-OL2DOoFlBLf_0/edit?pli=1#heading=h.a6sg6jck9r63) (see below for the analysis discussion and …