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I would like my data to have lists of dois, orcids, and ids of classes that I have defined in my schema.
How do I say that a slot should only have these values? I think I need to use the 'values_from…
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Create a validation framework and tests in MongoDB to validate existing data for referential integrity, schema compliance, and ensuring that data is mapped correctly to files and other object.
@eec…
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i could not find any explicit reference in the documentation to validating a zarr store, hence opening this issue.
we are supporting zarr nested directory stores as a file type for our data archiv…
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This will require setting up git LFS for gene mappings, as it exceeds github's 100MB file size limit
(If we're going to remove boomer output, we may also want to run BFG on the repo to reduce the s…
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Use the vrs 2.0 alpha schema for this...
1. Replace pythonjsonschemaobjects tool in core by using https://github.com/koxudaxi/datamodel-code-generator/ to generate the pydantic classes which can be m…
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**Is your feature request related to a problem? Please describe.**
`linkml-validate` doesn't accept children of a class specified in a range as valid. Being used to the behavior of inheritance in O…
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Speaking from an ontological or object-oriented point of view, [AgProduct.yml](https://github.com/w3c-ccg/traceability-vocab/blob/main/docs/openapi/components/schemas/common/AgProduct.yml) should be a…
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Trying to get output in ttl or owl format for pubmed-annotate fails with a few different errors.
Running something like the following:
```
ontogpt -vvv pubmed-annotate -t ibd_literature "irritable …
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steps to reproduce:
1) create a project using linkml-project-cookiecutter
2) make a breaking change to the schema yaml file
3) run `make test` (noting that the test still works even with the brea…
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**Is your feature request related to a problem? Please describe.**
The current implementation of gen-pydantic does not seem to support [any_of](https://w3id.org/linkml/any_of) accurately. The generat…