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Hi,
I am trying to build a docker image having installation of ontogpt in order to give it platform independence of running because as such I see it can not run on our HPC nodes or other Linux distri…
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It is common for instances of linkml classes to be be OWL classes. here neither exact_mapping nor slot_uri may be appropriate to link to that owl class. Instead consider `metaclass_for`.
This would…
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All quantitative values should show units, this is stored in the JSON as both the verbatim value (e.g. 0.15m) and as a normalized tuple (value=0.15, unit=m)
Related to #448
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I am developing a LinkML schema that is borrowing some ideas from Biolink, in particular its association model. I have run into a problem related to inheritance and the container pattern. Illustrating…
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**Is your feature request related to a problem? Please describe.**
LinkML docgen currently only supports the resolution of slots (or 'terms' as it's referred to in the MIXS schema/standard) by id/URI…
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> Not sure if this is the right place for this question -- is there a way to integrate a custom LinkML schema with the pip-installed version of the package, as opposed to needing to fork the repo?
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- How should they relate to the YAML file name?
- are there related best practices for using w3id.org
@sierra-moxon are you pleased with the w3id.org redirection for biolink? @sujaypatil96 just sh…
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Every run should result in a bunch of standard results (as @yaseminbridges has already implemented), and a single `results.yml` file that contains metadata about the run. That metadata will be defined…
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- [x] unify logging
- [x] how long does this take? maybe tee the logs?
- [x] LinkML gen-project artifacts go in `generated/`, not `.`
- `release/` is for a stable set of generate artifacts? maybe…
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### Schema vs ontology
linkml wants to be a schema development framework, not for ontologies. Right now I think this is mostly reflected in some aspects of data structure declarations, e.g. object …