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Can we add function to facilitate the plotting of abundance heatmaps. This is a need we often encounter in studies.
Starting point could be for instance existing, similar, plotting functionality fr…
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Hello, I am new to using these tools, so please excuse me if I don't explain well. I am trying to create a pangenome of Borrelia spp to map my tick microbiome reads against to quantify Borrelia prese…
ghost updated
3 years ago
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Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe - Angela Sofia Burkhart Colorado - Microbiome
htt…
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Spotting disease disrupts the microbiome of infected purple sea urchins, Strongylocentrotus purpuratus – Chloe G. Shaw – BMC Microbiology
https://bmcmicrobiol.biomedcentral.com/articles/10.1186/s1286…
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I applied your script on my data. As you can see in the metadata I have a column called traitment with ( CTRL , TR1 ,TR2 and TR4)
ko_abundance_file
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Hi team
Could you please help with how to use your package on a size of 15megabytes excel file?
It is not working on a such a big size. Please note that the features don't exceed 10,000.
we tried…
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`tip_glom()` fails if I try to use `hcfun=agnes`:
```
> ps2 ps2 sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux bullseye/sid…
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Hi thanks for your great work for curating various microbiome-metabolome data.
One thing I was curious was that in YACHIDA_CRC_2019 dataset you uploaded, there seems to be only 347 samples used. Ho…
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https://bugsigdb.org/Study_567 presents a Chinese study of colorectal adenoma, created recently by user Jeshudy on May 30, 2022. But Experiment 1 is from a Russian study on Parkinson's disease created…
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Hello,
I have some ONT reads of _Aspergillus fumigatus_ that I mapped against a reference sequence.
I am using Nanocaller for variants calling, My input files are a BAM file (555,1 Ko; 85 sequen…