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# #Hi, teacher
I'm trying to call DNA modifications by using deepmod.
First I am successful to create virtual environment and install deepmod step by step through following the command lines…
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**Describe the bug**
I am trying to use phables on my metagenome assembly, assembled with metaFlye.
**To Reproduce**
Steps to reproduce the behaviour, including the
1. Command executed
```
pha…
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Hi
When performing the analysis of finding m6A in DNA using alternative model with the default values the methylation rates are too high, for the control ones which were pcr products causing misstru…
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Hi,
Can we use NextPolish2 to polish the assembly generated by Oxford nanopore reads? Or is it only applicable for HiFi reads?
Thanks
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### Operating System
CentOS 7
### Other Linux
_No response_
### Workflow Version
1.0.0
### Workflow Execution
EPI2ME Desktop application
### EPI2ME Version
_No response_
### CLI command run
…
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Hello, thank you for developing this tool!
I ran some metagenomic nanopore-based flye assemblies through LRBinner, and then ran the resulting bins through checkm, but its looks like most bins are o…
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hi, I recently installed funannotate software, and an error was reported during testing.
(funannotate) [liuyuanchao@login ~]$ funannotate check --show-versions
------------------------------------…
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### Description of feature
Update the [README](https://github.com/cidgoh/nf-seqqc/blob/dev/README.md)
- [ ] Write the usage instructions
- [ ] instructions for the required databases (if any)
-…
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Hi,
I first use the transcriptclean to correct the nanopore dRNA reads generating the bam file. Should I set the data type parameter as transcript or Nanopore ?
Thanks a lot,
Bai
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**Description**
Hello, I am experiencing a bug upon running a Docker image as container for Bactopia.
**Steps to Reproduce**
Steps to reproduce the behavior:
```
docker run --rm -it -v "$PWD":…