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To summarize a discussion with @RustyGray, @QuentinAtkinson, @HedvigS and I, with input from @blasid :
We decided we only need to run the dual process model. The single process models, while statis…
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I believe you had attempted this initially as well but discussed about removing the redundant node clusters apart from mass, spin, q-ratio and redshift and redoing it with better spatial separation a…
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Hi, I am using SCTransform for separately normalize several 10x scRNA-Seq datasets,
and than I am following the tutorial about PrepSCTIntegration with great results: PCA, UMAP / tSNE and clustering w…
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Dear Seurat team,
I updated the Seurat package to version 4.2.0 and noticed that the results by FindMarkers and FindAllMarkers were different than ones generated by Seurat v4.1.0.
I loaded the…
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Online version of book.
chapter 16.1 reads:
"16.1 WHEN PROBLEMS CAN DIMENSIONALITY REDUCTION SOLVE?"
16.5.1 Principal Component Analysis repeats a code chunk.
"bean_rec_trained %>%
st…
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https://mp.weixin.qq.com/s/m5Z6wWjR4zDUlFLfohh9fg
ixxmu updated
2 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Danis102/seqpac
Confirm the following by editing …
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Hi, my data was obtained the conventional scRNA-seq technique (10X) with no labeling data. I found the nonsensical velocity flow from macrophage to monocyte using dynamo. I found your article called "…
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Currently, I´m using two samples which are very simillar and I ask myself how to test those adequate (also after reading your current paper in PLOS CompBiol). So, there are several questions I have:
…
fisst updated
2 years ago
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@jorvis @adkinsrs @songeric1107
I was testing the single cell workbench with 2 different datasets and at the Principal Component Analysis (PCA) step and Genes to colorize (comma-separated), return…