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Hi, I set an environment by using the DROP_1.2.2.yaml, then run the demo in the environment. It worked well. Then I use the same environment to run my own data. The expression part worked. But when I …
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**Describe the issue**
![image](https://user-images.githubusercontent.com/42739946/167596078-b4f74cf1-7ec7-4a7d-a679-2595007cc87b.png)
I ran RepeatMasker using a mixture library deriving from de…
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I used this file as input: `yew:/eupath/data/EuPathDB/workflows/PiroplasmaDB/49/data/cfelWinnie/makeAndMaskTopLevelGenome/topLevelGenomicSeqs.fasta`
The old workflow params (from `input/task.prop`…
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Dear All,
I'm attempting to build rmblastn 2.11.0 from source using the steps prescribed at http://www.repeatmasker.org/RMBlast.html.
I can furnish any log output upon request from the make comm…
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Hi,
I am using the `.align` to run the `calcDivergenceFromAlign.pl` script, and I am wondering if there is any way to filter data in the alignment file (and other output files from RepeatMasker) by…
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Hi!!
I would like to run TEtranscripts but my species of interest doesn't have a UCSC model yet. I have a low quality genome assembly and a very high quality transcriptome assembly for this species. …
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I am trying to run RepeatMasker on the ComputeCanada supercomputer system. Using mostly default parameters, it is taking a very long time, it's timed out several times, I'm now up to 24 hours and it i…
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Hi,
I am new to bioinformatics, and was struggling to perform repeat prediction and annotation. I came across the bioarchive paper for EarlGrey, and felt that this tool could help me. Therefore, I …
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Hi!
I installed your program using the singularity img and I try to update the RepeatMasker libraries with the RepBase library I have. So I follow what was said in the issue #46, putting my Repbase D…
sigau updated
2 years ago
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**Are you using the latest release?**
Using funannotate 1.8.13 with Python 3.8.15 and Ubuntu 22.04.1 LTS
**Describe the bug**
I cannot get predict to work. Whenever I use the predict command, it…