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I have been looking into using the RNA-seq data but have some questions on the gene annotations for the V2-RNA-seq data that I get from running your GDC-prepare-function.
How do the 21022 genes tha…
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Hello there,
I am very excited to start using kallisto with some of our bulk, long-read RNA seq data. For the analysis I am conducting, I wanted to use kallisto to quantify read counts, and then us…
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Let's use this issue / thread to troubleshoot what looks like `rna.rsem_count` crashing compute nodes. I'll start off by adding my notes from the past related to this.
BTW, whenever you see "I w…
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## 🐛 Bug
I get this error when I use repLoad(/path/to/mixcrclonesoutputfile.txt).
Error in strsplit(df[[.dalignments]], "|", TRUE, FALSE, TRUE) :
non-character argument
I recheck the data…
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This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc:
Requests by Andrew Farmer
http://gmo…
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@adkinsrs
This happened with several datasets.
With the 4-6wks, mouse,scRNA-seq, utricle Atoh1-transduced supporting cells (Groves) and with P15 Single cell RNA-seq analysis of mouse cochlear cells …
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As per [suggestion](https://github.com/malariagen/fits/issues/56) I have written and run code to pull data only from MLWH and Subtrack, and not from iRODs/baton. See [this code branch](https://github.…
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Hi, thank you very much for Moscot and Cellrank resources! I was wondering if you could please advise the best way to get around the "XlaRuntimeError: RESOURCE_EXHAUSTED: Out of memory while trying to…
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https://mp.weixin.qq.com/s/9SUcWmqfHNukADZuQiHVoA
ixxmu updated
3 weeks ago