-
## dflow-helloworld.ipynb
> from https://github.com/zjgemi/dflow_helloworld/blob/master/dflow-helloworld.ipynb
~~~python
#Define a Python OP
from pathlib import Path
from dflow.python import OP,…
-
Hi there,
I am trying to use NextPolish in our Slurm based HPC system. As I only have access to a certain partition, I need to specified the "-p EMB" option. Based on the manual, I can pass some pa…
-
Is it possible to enable the log directory to be set to something other than a directory in `.snakemake`? For large workflows that submit many jobs, it would be nice to be able to write these to a scr…
-
The most commonly used job scheduler with Singularity or bioinformatics analysis jobs is Slurm. Here are its benefits:
- load balancing between multiple nodes
- limiting ram/process job size
- …
-
### Describe the bug
Hello, everyone. I met a problem when I am trying to load a data file using load_dataset method on a Debian 10 system. The data file is not very large, only 1.63MB with 600 recor…
-
**Is your feature request related to a problem? Please describe.**
When running snakemake on a slurm cluster, some jobs fail. However, it is not clear whether they fail due to time or memory constrai…
-
Hi there. Thanks for putting together such a useful tool. I just have a quick question about the `-m` flag. The description provided says:
```
Optional arguments:
-m : Execution mode:
…
-
Hey, and thanks for putting this documentation together! It maybe worth bookmarking the link on SWC's #computing channel to make it easily discoverable.
In the "Remote development" section of the …
-
I stumbled upon this issue, because I tried to run the CWL test suite, which basically means that there's no installed version of Toil, other than the one in the virtual environment I'm using to run t…
-
On a newly built cluster using ACRC/citc-terraform@e3134045454004af0e51932ebf214853eb93461d with the default "4" branch of ACRC/slurm-ansible-playbook
Submitting a job to start the node results in …