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Task 3
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Hi there,
Congrats on a wonderful package. And thank you for the most comprehensive tutorial! Much appreciated.
I am trying to derive my own set of covariates for hg38.
I have downloaded repliseq d…
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I am trying to filter on a field with round parentheses in its name but I cannot figure out what character to use to escape them in the SnpSift filter query string.
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After upgrading to snpEff version 5.0-1 within conda, the URL for the MN908947.3 genome fails to download:
```
00:00:00 ERROR while connecting to https://snpeff.blob.core.windows.net/databases/v5_0/…
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Hi,
I am really impressed with your Spritzversion 0.2.2. Here it seems that you are using a special version of SnpEff (info from the vcf file combined.Spritz.sneff.vcf: "SnpEffVersion="4.3u (build …
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I've created this issue to track the progress and feedback for the `MERGE_WF`. Will ping with further/updates on this thread.
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**Tool Details**
- Name of tool:
- Tool homepage:
- Tool description:
- Data suitable for MultiQC plot(s):
- Most interesting data for General Stats table:
**Tool output:**
- Log…
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Hello all,
I am trying to implement multiple filters to be passed through bcftools query but am receiving results that are not as strict as I would like.
I have run GATK on 23 organism strains and …
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I'm using Slivar to apply segregation filters to a multi-sample vcf for SV calls generated by SURVIVOR followed by SVTYPER.
I understand that Slivar was mainly developed through SNV/InDel point of vi…
nroak updated
3 years ago