-
Hi, I am trying to apply your pipeline on my 10X Genomics data. When I run command for dropTaq. It didn't work for me. I don't have separate 3 files in my data as you explained in your pipeline. I am …
-
Hi, thanks so much for developing this great tool. I just run a 10x Genomics scRNA sequencing on a pool of hashtag multiplexed sample. I tried to use the cmd below to generate the cell-hashtag count m…
-
May I ask why there is no Infercnv.observations_Dendrogram.txt result file after running infercnv?
```
infercnv_obj = infercnv::run(infercnv_obj, # inferCNV对象
cutof…
-
### Ask away!
The pipeline has run successfully using `--kit 'visium:v1'` with `2.2.0` The output generated are as follows
```
config_stats.json
gene.expression.mito-per-cell.tsv
gene.expressi…
-
Hello,
We are analyzing Spatial Transcriptomics data from Visium 10X Genomics data, and we have multiple capture areas. We want to enhance our whole dataset with BayesSpace, but as it takes spatial…
-
Hello,
I am using infercnv with my data and some samples are having 2 types of errors in step 15.
`
![image](https://user-images.githubusercontent.com/77565848/190586807-de280534-ad4b-4464-a46b-…
-
Apparently, variable-length strings incur quite some overhead in terms of file size, so write arrays of fixed-length strings when the length differences between the elements of the array are small.
…
-
Dear CelliD developers,
I am using CelliD to analyze my own scRNA-seq data from 10X genomics. When running the 'RunCellHGT', I encountered the following errors:
Error in rep(seq(length(PathwayMa…
-
I was wondering if there was a tool for demultiplexing scRNAseq fastqs at the level of single cell, so that I have one fastq files for each cell in my data set. This will allow me to have the proper i…
-
Good afternoon,
In the config file for `MKFQ`, there is a final parameters `Barcode_Length`. In the example files provided by google drive, the barcode length is `54` for the 10x example. I have so…