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Thank you for contributing this repository to the community!
I want to use ProSST for my own dataset. Unfortunately, my dataset only contains protein sequences (e.g., "MEAIAKYDFKATADDE") and does n…
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I have a fundamental doubt about the difference between Alphafold2 and Parafold running procedure, how to determine whether Parafold is doing Parallel task unlike sequential tasks performed by Alphafo…
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Hi,
When I want to run the script af2_metrics.py, I get the following ModuleNotFoundError:
`Traceback (most recent call last):
File "/sw/sci/app/rfdesign/RFDesign/scripts/af2_metrics.py", lin…
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When specifying the dependency on colabfold directly, we get a logical trace that explains to us that colabfold 1.5.5 only support python 3.9 to 3.11, while we are on 3.12:
```
$ echo "colabfold==…
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In the [available python wheels page](https://docs.alliancecan.ca/wiki/Available_Python_wheels), add a link to the wiki page, if it exists, to the corresponding page. Similarily to what is done on the…
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Hello. I am making structural predictions using the colab version and the local version.
I have confirmed that there is a big difference between the two versions.
To solve this difference, I run alp…
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Hi Paula!
I'm trying to run beta mining for a project here, but when create_model_metainfo is run, prody returns an empty "pdb_head" varaible. These are predictions I generated with our in-house AF…
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Hi RFDesign team,
I've been trying to run the af2_metrics.py program and after solving issue #26, I found that the model 4 parameters for AF2 weren't downloaded:
` File "/home/ec2-user/RFDesign/s…
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## 論文リンク
https://www.nature.com/articles/s41586-021-03819-2
(Supplementary Information も同ページにリンクがある)
## 公開日(yyyy/mm/dd)
2021/07/15
## 概要
タンパク質の構造予測コンペである CASP14 において他チームを圧倒した精度を達成した AlphaFol…
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Upon running the `run_eval.sh` to download the requirements and setup the environment for this project two errors popped up:
`Using cached dm_sonnet-1.35-py3-none-any.whl.metadata (1.2 kB)
ERROR: …