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## **Describe the bug**
caper.cromwell.WomtoolValidationFailed: RC=1
## **OS/Platform**
- OS/Platform: [e.g. Ubuntu 18.04, Google Cloud, Stanford Sherlock/SCG cluster, ...]
- Conda version: 4.13…
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- Dataset: 941 features selected on 10X GE, then 10X GE -> AML PBMC_D11T1 gene score (original prediction by Seurat: Acc: 0.647 ARI: 0.409 MacroF1: 0.486, by MLP: Acc: 0.543 ARI: 0.169 MacroF1: 0.410)…
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Thank you for providing very useful software.
I wonder if this software is suitable for bulk tissue ATAC-seq and RNA-seq.
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I am running pipeline version: v1.9.2. My pipeline runs till atac.macs2_signal_track, then the next atac.qc_report is not triggered. I have following questions about the pipeline:
> 1. Is there …
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Hi,
I am trying to run celltype/tissue specific analysis as mentioned in the tutorial on ATAC-seq data.
I obtained narrowPeak files from MACS2. I was wondering how to approach from there to perf…
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I am trying to train ChromBPNet on Arabidopsis ATAC-seq data, but run into the error `"Input file shifts inconsistent"` as in #153, #174 and #176. Having read through these other issues, I was able to…
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Hi Huamei,
I'm trying to predict cell proportions with your tools for ATAC-seq data and it does not work even I'm running the example data.
The command with issue is "deconPeaker.py deconvolution…
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## **Describe the bug**
When running the newest pipeline (v2.2.0) with TEST command `caper run chip.wdl -i https://storage.googleapis.com/encode-pipeline-test-samples/encode-chip-seq-pipeline/ENCSR00…
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### Description of feature
This issue is to provide an overview of different tools and related sub-issues related to supporting multiple modalities:
- CITE-seq (=RNA+protein) (https://github.co…
grst updated
6 months ago
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## **Describe the bug**
when i append the tss file ,it show this mistake
## **OS/Platform**
- Caper version: 2.1.3
## **Caper configuration file**
2022-04-11 21:37:00,784|caper.cli|INFO| Crom…