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Dear,
I succeeded a very similar first run with docker (ONT assembly all the rest the same). The ONT run ended after few hours and gave results.
The second run hangs on some prothint record (Pac…
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When a fastq has a missing 1st entry (due to short reads and trimming) seqkit seq infers that the type of sequences in the file is "unlimit" rather than "dna": https://bioinf.shenwei.me/seqkit/usage/#…
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Placeholder issue for future task to build some CI tests for the janis-bioinf / unix repos that grade each tool on criteria like:
- friendly name
- attribution information
- Existing container ->…
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Please update assembly.py to run spade as the default assembly software, similar to quality control software the user shall be able to specify the assembly software. The default is spades (http://bioi…
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Hello,
Im running the ldsc.py and getting this correlation matrix wrong in all the chromosome except in the first one.
```
Summary of LD Scores in results/annots/mac.dc.2.l2.ldscore.gz
…
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In [`013cecb`](https://github.com/Sulstice/Uptime-Cheminformatics/commit/013cecba3f230d3253d7b05684f9ad7442c2a366
), Adverse Drug Reaction Classification System (http://bioinf.xmu.edu.cn/ADReCS/) was …
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Hi, I need help with the snp assay:
**Describe the bug**
During the snp run I receive an FileNotFoundError at step target_metrics:
2023-09-01 23:17:01,724 - celescope.tools.barcode.add_step_me…
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Dear authors,
I got the error at prothint step.
```
# Thu Mar 21 12:48:30 2024: Calling prothint.py...
# Thu Mar 21 12:48:30 2024: starting prothint.py
/data/scratch/mpx586/github/gene_predic…
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I was thinking of using DIPS-Plus for training a classifier for protein-protein interaction (I confess I have little experience in ML, any advice welcome).
The database describes the pairs based on t…