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## Bug Report
### iRODS Version, OS and Version
iRODS 4.2.11, Ubuntu 18.04 (Docker)
### What did you try to do?
A user tried to put files with spaces in their filenames into directories (or …
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## 📕 Summary
Update the [LabCAS page](https://edrn.nci.nih.gov/data-and-resources/informatics/labcas-cancer-biomarker-data-commons/) based on what's described in [this document](https://docs.google…
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Do we have a function to extract "Historical Trends" data? For ex, https://statecancerprofiles.cancer.gov/historicaltrend/index.php?0&9953&999&7599&001&001&28&0&0&0&1&1&1&1#results
The URL to "Expo…
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Hello! Great tool you have developed.
I was curious as to the specific preprocessing steps for the proteomic data. For instance, CPTAC LUAD seems to contain 11485 proteins, where the original was …
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Hi,
I have previously used the noobsb background correction method on EPIC array data. For a manuscript revision including a classifier for breast cancer, we need to process an additional dataset. No…
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Hello! Sorry for all of my many questions
I was able to get a count for a single one of my 16 fastq files using VIRTUS.PE.cwl, but had to use cwltool --singularity to run it, and if I attempted to …
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Some examples here: https://arax.ncats.io/beta/?r=36527
example edge attribute list containing the attribute of interest:
```
--
attribute_type_id: | biolink:aggregator_knowledge_source
value_t…
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Hi,
I would like to download TCGA SARC data from GDC by TCGAbiolinks package.I wrote below code for that pupose:
```
query
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Hi
I am trying to get `Mutation data (hg19)` for `ESCA` cancer in `maf `format; I have done so but I am getting error
Can you help me please
```
> query.maf.hg19 View(query.maf.hg19[[1]][[1]]…
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See https://www.cancergenomeinterpreter.org/biomarkers, a CC0 licensed database. Perhaps to be aligned with the CIVIC bot? cc @andrawaag
Reference: http://www.biorxiv.org/content/early/2017/05/20/1…