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> visium_kidney = createGiottoVisiumObject(visium_dir = data_path,
+ expr_data = 'raw',
+ png_name = image_name,
+ …
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From the docstring,
```julia
help?> Differential
search: Differential
struct Differential using Symbolics
julia> @variables x y;
julia> D = Differential(x)
(D'~x)
```
B…
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Hello, I am doing differential expression analysis and I got the following error, how can I fix it. Thank you!!
Can't use an undefined value as an ARRAY reference at /home/crt/anaconda3/opt/trinity-2…
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MWE (Julia Version 1.10.2, Symbolics v5.28.0, SymbolicUtils v1.5.1):
```
using Symbolics
expr_gen = (var, fun) -> Differential(var)(Differential(var)(((-Differential(var)(Differential(var)(fun)…
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Hello,
Does libra have the same capability as Seurat to only test genes that are detected in a minimum fraction of min.pct cells in either of the two populations when performing differential expres…
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Hi Maria,
Thank you very much for developing this robust tool!
I am conducting the differential ERVs analysis. I have a question regarding if we should take gene expression into consideration.
…
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What is the derivative of `x` with respect to `2x`? 1/2 is a great answer. An error is good too. 0 is wrong.
```julia
julia> @variables x;
help?> Symbolics.derivative
derivative(O, v; simpli…
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Hello,
I wanted to do differential gene expression on the clusters of my data. When I plotted them, I obtained the expressed genes. However, I wanted to know the significance of the number in y-axis …
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The total counts of single cells differ significantly, which affects the downstream differential expression analysis. So I was thinking to normalize the data before differential expression analysis. S…
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[log_2024-09-16_18-54-51.txt](https://github.com/user-attachments/files/17020939/log_2024-09-16_18-54-51.txt)
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