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Things to clean up:
- [ ] subject directory variable naming conventions (e.g., $subjdir, $direc, $baseDir are all used to mean the same directory)
- [ ] turn off verbose mode in `bb_eddy_wrap` and…
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Hello,
This issue began with mean diffusivity images causing 3DSlicer to crash. Andras Lasso managed to identify the issue, which is further detailed [here.](https://discourse.slicer.org/t/slicer-q…
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Hello,
Although UKFTractography completed without error for most of my cases, I have 3 cases that threw the following error. Any insight is appreciated - thank you!
(pnlpipe3) [root@4d78e987681…
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Hi,
When I try to run your dockerfile to install Matlab Runtime in my Linux VM, I get the following error:
The following error was detected while installing lxe/lxe_glnxa64:
/opt/mcr/v97/bin/…
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Currently, we maintain two different shell scripts and two different datasets:
1. [`batch_processing.sh`](https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/master/batch_processing.sh): Th…
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### Title
The BIDS connectivity project - finalization of BEPs
### Short description and the goals for the OHBM BrainHack
Besides `BIDS`' success, expansion, and description of multiple data modali…
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I'm running qsiprep with --recon-only using docker.
I noticed that when the docker command gets executed, both the -w as well as the --bids-filter-file sometimes revert to the default value despite o…
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# Extending DIPY Vizualisation or workflows framework
## Project Description
DIPY is the largest community-based open-source software project and it implements many methods in computational neur…
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### Description
Design a Arcana analysis class that implements structural MRI preprocessing and analysis to be used stand-alone or as inputs to other pipelines (i.e dMRI, fMRI, etc.)
### Benefit H…
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I ran bids/ndmg through the docker container on 64 direction dMRIs, everything ran smoothly, but I'm having trouble with the HarvardOxford edgelist, the ROI labels don't seem to correspond between the…