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Running this tutoria (`day1`) l in a large group - all the Mac users successfully see the app at `http://localhost:3000/` and all the Windows users (4 of them) instead see "Access to localhost was den…
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I'm using Excel-DNA Intellisense for VBA functions, which involves providing a worksheet named `_Intellisense_`. All works great, though I find that new line characters (ascii 10) in the "argument hel…
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We are using "Grobid" to convert PDF articles to "XML: TEI" format which allows us to extract the content of "XML: TEI" plus Metadata of "TEI" and citation context of "TEI", but, while processing '' p…
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is MOODS.search() deprecated?
if yes - what function in latest 1.9.4.1 release can help me do that thing?
I am trying to use an old python script and while:
MOODS.search(seq, [bm], 48, algori…
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Hi,
I am using JACUSA2 to detect RNA editing events with paired RNA-seq and DNA-seq data.
However, DNA-seq and RNA-seq data were mapped to different reference genomes. The reference genomes wer…
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- [x] report scaffold containing best hit per feature in genetic map
- [ ] extract features from reference annotations as pseudo genetic map
- [x] autodetect when to use gmap vs. gmapl
- [ ] tune t…
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**Describe the bug**
I have an ICGC cohort of WGS FASTQs. When run through the align-DNA pipeline they output an empty bam file with no reads. The pipeline goes through completion without any error o…
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Hello!
Trying to generate a custom .gfa file but hitting this snag:
```
$ python /home/apps/Aeron/AeronScripts/GraphBuilder.py -e /home/refs/human/dna/hg38_wControl.fa -g /home/refs/human/rna/gen…
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Over the past few months, I have been working on an evaluation of the study design and data collection protocol used for spawning ground surveys of Columbia River chum at mainstem locations. The obje…
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When I used BAM files and version 2.9.4 of GRIDSS, the log files look like
```
INFO 2022-07-19 15:29:56 SAMFileWriterFactory Unknown file extension, assuming BAM format when writing file…