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Thank you for your great tool!
I'm using EggNOG mapper to annotate my non-model organisms for subsequent enrichment analysis. The mapper outputs GOs for each gene and other terms in KEGG KO, Pathwa…
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I run this
# Enrichment Analysis EA
# Gene Ontology (GO) and Pathway enrichment by DEGs list
Genelist.PRAD
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Hi, Thank you so much for the workflow. I'm recently facing the below issue at the DE step. Could you kindly have a look at the issue when possible?
Analyzing fetal-brain test data
### download …
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We should look into bringing enrichment into PomBase
Options:
https://metacpan.org/release/GO-TermFinder
hierarchal filter, best per parent
https://biit.cs.ut.ee/gprofiler_archive2/r1760_e93_e…
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We have the Sequence, Frequency, and Enrichment.
In order to calculate the ratio, we need Enrichment from both the Sorted and Naive Library of the same Sequence.
Other than that, we need Enrichm…
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Pending the benchmarking study on PFOCR as a resource for enrichment analysis, we will optimize a procedure to calculating score as part of a BTE query, implmenting an API (or Python lib) to perform t…
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Hi, I’m currently working with the Master of Pores 2 to detect RNA modifications. In my analysis, I need to determine which of the two samples being compared has an enrichment of modified RNA at posit…
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Hello,
I am using Enrichr in "R" for my pathway analysis. It is not references in the package description https://cran.r-project.org/web/packages/enrichR/enrichR.pdf how to define the background in…
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We need somewhere a simple vignette documenting recommended standard enrichment workflows using bugsigdb. It could include:
1. (lower priority): data preparation from a couple of the most popular B…
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Hi,
Thank you for developing this tool. I tried to run Scenic+ on my mutiome data and I got an error message that I don't quite understand.
Could you help me with this issue.
Thanks in advance
Thi…