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waldronlab
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bugsigdbr
R-side access to published microbial signatures from BugSigDB
https://bioconductor.org/packages/bugsigdbr
GNU General Public License v3.0
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Default if importBugSigDB does no import the latest Zenodo stable version
#57
sdgamboa
closed
4 months ago
3
fix min.size; apply unique first
#56
LiNk-NY
closed
6 months ago
1
Use BugSigDbExports v1.2.0
#55
jwokaty
closed
4 months ago
0
[BUG] getSignatures can produce signatures < min.size
#54
jwokaty
closed
6 months ago
1
`importBugSigDB` function returns error
#53
npechl
closed
6 months ago
3
Error if more than 1 devel cache
#52
jwokaty
opened
7 months ago
0
add bugsigdb-related links
#51
lwaldron
closed
8 months ago
0
Release 3.18
#49
lwaldron
closed
4 months ago
52
pass arguments from writeGMT to cat
#48
lwaldron
closed
10 months ago
1
GitHub Action Error
#47
jwokaty
closed
9 months ago
2
Remove reference to main
#46
jwokaty
closed
10 months ago
0
Can't download uberon
#45
sdgamboa
closed
11 months ago
4
subsetByOntology: include query term itself
#44
cmirzayi
closed
1 year ago
6
[BUG] Study 722 is missing k__bacteria from MetaPhlAn taxon names
#43
cmirzayi
closed
1 year ago
1
Can't create signatures
#42
sdgamboa
closed
1 year ago
7
version should accept full SHA
#41
lwaldron
closed
1 year ago
1
Unexpected output format when creating signatures for study 727
#40
sdgamboa
closed
1 year ago
1
documentation enhancement of using devel
#39
lgeistlinger
closed
1 year ago
1
import PMID column as numeric
#38
lwaldron
closed
1 year ago
3
importBugSigDB(version = 'devel', cache = FALSE) not reading Study 727
#37
sdgamboa
closed
1 year ago
16
standard enrichment workflow
#35
lwaldron
opened
1 year ago
2
3.16 Release?
#34
jwokaty
closed
1 year ago
1
Fix GitHub actions
#33
jwokaty
closed
1 year ago
0
Warning in importBugSigDB() when updating a previously cached version (windows-only)
#32
cmirzayi
closed
1 year ago
3
Update default importBugSigDB to v1.1.0
#31
jwokaty
closed
2 years ago
3
BugSigDB 1.1.0 release (for Bioconductor 3.15)
#30
jwokaty
closed
2 years ago
3
all(grepl("^[A-Z][a-z ]+$", names(s))) is not TRUE
#29
lwaldron
closed
2 years ago
2
importBugSigDB mixing Experiments?
#28
lwaldron
closed
2 years ago
4
importBugSigDB(version="devel") is missing studies
#27
cmirzayi
closed
2 years ago
2
Issues in recent build report
#26
lgeistlinger
closed
2 years ago
1
Correct version
#25
jwokaty
closed
2 years ago
0
Update Github actions
#24
jwokaty
closed
1 year ago
4
Add version argument
#23
jwokaty
closed
2 years ago
4
Using cache might report using a cached copy from future date?
#22
jwokaty
opened
2 years ago
1
Informative news for 1.0.0
#21
lwaldron
closed
2 years ago
2
Pull from stable/zenodo
#20
jwokaty
closed
2 years ago
12
Pulling from github causes BiocCheck error
#19
lgeistlinger
closed
2 years ago
3
Update version in DESCRIPTION
#18
jwokaty
closed
2 years ago
0
Remove dump_release.R
#17
jwokaty
closed
2 years ago
0
Improve formatting
#16
jwokaty
closed
2 years ago
1
Address recommendations from Bioconductor
#15
jwokaty
closed
2 years ago
3
Update check-bioc.yml bioc to 3.14
#14
jwokaty
closed
2 years ago
0
ontology-based queries for experimental factors and body sites
#13
lgeistlinger
closed
2 years ago
1
Scrape export links from export page
#11
lgeistlinger
closed
2 years ago
1
[BUG] GHA fails on mac and windows container due to BiocVersion issue
#10
lgeistlinger
closed
2 years ago
1
endomorphic version of of getSignatures `tax.level` argument
#9
lwaldron
closed
2 years ago
6
Change email
#8
jwokaty
closed
2 years ago
0
Prepare for submission
#7
jwokaty
closed
2 years ago
0
Bioc submission
#6
lgeistlinger
closed
2 years ago
8
Calc pairwise overlaps
#5
lwaldron
closed
3 years ago
3
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