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Hello,
First of all, thank you very much for this helpful tool :-)
However, I encountered an unexpected issue.
**The problem :** I tried to generate a 2 channel bnx file. To do so, I used the…
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[RestrictionBatch does not implement a catalyse method, as it would not have a real meaning when used with large batch.](https://github.com/biopython/biopython/blob/master/Doc/cookbook/Restriction/Res…
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It would be good to have the feature to create subfolders in the Expression Profile BB, with the option to automatically group by "Proten name", "Protein Type" (enzymes, transporters, binding partners…
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Hi Eoghan et al,
After sorting out my python env issues, I've managed to successfully run Pore-C-Snakemake through to its salsa bed outputs, and it seemed to work beautifully in that (good news!).
…
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The Matlab executable listed in the Readme links to a 404'd page:
https://github.com/pauloabelha/enzymes/blob/master/Bremen/edge_detector/for_redistribution/edge_detector_installer.install
Do you …
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Hello,
Thanks for the amazing work on FROGS!
I am currently trying to analyse some microbial datasets using your picrust2 implementation and I am a bit puzzled by the meaning of NAs in function "c…
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why the maximum number of nodes are constrained?
and what about other dataset except for D&D, ENZYMES?
in `example.sh`, there are only information (of max_node) about two dataset.
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Are these the same (only difference seems to be glutamate protonation state, and the synonyms align
GO:0052654
L-leucine transaminase activity
2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoat…
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Hi,
Thanks for developing such a helpful tool!
But I saw a paper (https://www.frontiersin.org/articles/10.3389/fpls.2023.1223591/full) that said hic-pro is unsuitable for Hi-C 3.0.
Because Hi-C 3…
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NTR Dihydrouridine absent from cell
To further investigate this connection, we generated a strain lacking all four Dus enzymes. D was undetectable in that strain (Figure S1B),
FYPO:0007934
…