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Discussed on managers call https://github.com/geneontology/pipeline/issues/300
A statistic that is very useful for GO is the number of genes that are not mapped to the reference proteome *for which…
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Hi,
When I was using pasa to update the genetic prediction results of EVM integration, I have the following error, could you please help?
Run the command:
/home/anaconda3/pkgs/pasa-2.4.1-h1b792b2…
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Handling redundant information: Chris slides Montreal meeting Oct 2018: https://docs.google.com/presentation/d/1TzXfwR3ahQYL2MKp6yL5oO13CEUYL-WexzUyjV1OcSA/edit#slide=id.p2
- Define redundant inform…
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I am running the long reads xTea and I am having an issue when running HG38. This was not an issue using T2T reference.
When I am running HG38 with the below command, everything runs smoothly until …
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### Description of feature
Currently, the `.cnn`, `.cns`, and `.cnr` gene columns are not annotated by default as the `cnvkit/batch` module is missing the annotate argument.
```
chromosome star…
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From #756
I was looking for dbxrefs between UniProtKB accessions and HGNC gene symbols in the goa_human.gpi file on current and couldn't find them.
They are, however, available in the source gp…
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FLybase and SGD have more complex multi-term phenotypes that require special consideration in the modeling.
We need to plan and implement ingests for these.
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Hi there,
Please help
I encounter this error when running python3 -m dvc repro:
Stage 'Download' didn't change, skipping
Stage 'LT' didn't change, skipping
Runni…
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Hello,
Really fantastic package and pipeline! I was wondering if it may be possible to run the function runGenePeakcorr using the **updated mouse genome mm29**? If this must be created manually by …
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Hi,
Thank you for this fantastic resource!
The CAT genes index does not appear to have annotation entries for 3 samples:
HG002
HG005
NA19240
https://github.com/human-pangenomics/HPP_Year…