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I came across this paper in a Web of Science alert that may be helpful in writing our grant:
Shojaie, A., & Sedaghat, N. (2017). How Different Are Estimated Genetic Networks of Cancer Subtypes?. In…
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Hi guys, really liking the pySCENIC adaptation (saving alot of time in our hands!) however, Im having the following issues with pySCENIC grnboost (through command line) when running on a large integra…
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Hello,
I have some questions about the methodology of PROM that maybe you could help to understand and solve. I wrote to
Sriram Chandrasekaran but he didn't answer these questions.
I run the P…
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**Describe the bug**
I am encountering an error when using `Decoupler`'s `run_ulm` function. The error states that no sources have more than `min_n=2` targets, even though I have reduced the `min_n…
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https://doi.org/10.1038/nature11503
>The genome-wide identification of pairs of interacting proteins is an important step in the elucidation of cell regulatory mechanisms1, 2. Much of our present kno…
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Dear Pndo developers,
I was wondering if you could help me to debug my code - I am just following your tutorial and applying it on my data below, however I ran into an error irrespective of which s…
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Hi,
I am trying to run SCENIC on a subset of cells (Seurat object).
I used the following vignette to do so: Running SCENIC, SCENIC (Single Cell rEgulatory Network Inference and Clustering)
Vign…
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hi @joschif, congrats on the publication and thank you for porting the analysis in a package!
I would like to ask for an advice for analyzing a 10x multiome dataset (control and condition with mult…
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My Dataset is Like this...
**SNP**
**Gene Expression**
![image](https://user-im…
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Good afternoon! I have been sporadically tinkering with my GRN analysis for some time, and I am running into various problems. For starters, the number of unique target genes detected by Pando is less…