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Hi,
Thank you for the software,
I have observed that for some genes some targets isoforms are absent for the orthology classification file,
Have you already observed that ? Is there a reason…
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We should document variants in certain genes that shouldn't be set to reference (if missing, as opposed to actually reference):
* CYP3A5
* CYP2C19
* UGT1A1
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### Report
What's happening here is confusing at best. There's surely an issue with the order of my commands and I probably wasn't using the API as intended but I'm probably not the last one to use …
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These genes have had revised structures which means that they
These genes do not have signal peptides because the sequence does not match the UniProt sequence at the N-term.
https://www.pombas…
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I come across this issue many times when I have two Anndata objects A and B and I want to change B to have the same vars as A by keeping the shared genes and inflating the new genes that are in A but …
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### Discussed in https://github.com/FakeFishGames/Barotrauma/discussions/14754
Originally posted by **Sulphur22** October 1, 2024
### Disclaimers
- [X] I have searched the issue tracker to…
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hello, thank you for making this great tool. I cannot seem to understand how to use it.
I have differentially expressed genes from findmarkers() in seurat between diseased fibroblasts and control fi…
Flu09 updated
3 weeks ago
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It would be very useful to have annotations for KEGG subsystems and genes assigned by the ModelPolisher. This would save a lot of time and work during model curation.
To obtain genes' annotations o…
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When using the stDiff-sc/dataset1_seq_1670.h5ad and stDiff-sp/dataset1_spatial_246_preprocess.h5ad datasets downloaded from Zenodo for training, I encountered the following error:
```bash
ValueErr…
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1. Make blast db for Hydra
2. Make blast db for Nematostella
3. Bowtie2 index
4. Blastn hydra genome to nematostella genome
5. Blasn Nematostella genes to Hydra genome
6. splign