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I wanted to use DIMPL to analyze the genome of Xylella fastidiosa for ncRNA, but the genome that is deposited doesnt seem to work.
Here is a copy of the code in the first Jupyter notebook and the err…
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**Issue: Long Running Time and High Memory Consumption for `paffy` in `cactus-blast`**
Hello,
I am aligning wheat genomes using the `cactus-blast` workflow, and I have encountered significant is…
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Dear AmpliconSuite Developers,
First of all, thank you for developing such a great software that provides a lot of convenience for ecDNA research. I encountered a little difficulty when trying to a…
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**Is your feature request related to a problem? Please describe.**
In my workflow, I frequently want to get the latest genome/annotation files for a number of RefSeq (`GCF_*`) and GenBank (`GCA_*`)…
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In the future, I want to map the resequencing data of different species of onto my map genome.Then the group vcf with good classification is used to carry out the process of vgmpmap
I wonder if this …
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Hello Genrich developers,
First off, thank you for creating a great tool. It's been easy to use so far. I was wondering if there is anyway to input a custom chromosome size file for hg19? For insta…
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Hi, I have two huge genomes (ref: 48G; query: 20G).
To obtain an accurate genome alignment, I tried to annotate the transposable element (TE) and filter the non-TE sequence longer than 50bp to be the…
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### Description of feature
A genome note provides meta data related to the specimen used to produce the genome assembly, the specimen used to generate HiC data and the specimen used to produce RNA-Se…
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Hi!
i noticed that `SelectGenes` Available genome are: hg19, hg38, mm9, and mm10
can i use the genomes of other species?
If so, how exactly should I do it
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After updating to 0.4.3, genome_fetcher.py reported error:
```
DAJIN2 --control barcode01 --sample barcode02 --allele actc1L_cont_knockin.fa --name 02 --genome xenLae2 --threads 8
2024-03-29 11:48…