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```
Hi guys,
I'm getting a segmentation fault on the newest version that runs fine with the
same commands on the previous version.
I am running a bunch of alignments against virus genomes.
The pro…
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Ran HiCUP without a configuration file and got the following errors:
[wingetts@headstone hicup_patches]$ hicup --zip --digest /bi/scratch/Genomes/Human/GRCh38/Digest_Homo_sapiens_GRCh38_HindIII_Non…
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Hi Adam,
I got an empty bam file after addsnv.py. The command is :
`addsnv.py --varfile simu_snv_sites.txt --bamfile simu_N.bam --reference ucsc.hg19.fasta --procs 12 --maxdepth 4000 --cover…
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"Whole-genome sequencing and targeted amplicon capture" says:
> "Do not mark duplicates in the BAM files for samples sequenced by this method"
However, in the BAM file preparation, it is writt…
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Number of reads generated by some of the tools managed by `rnftools` is not precisely as requested, presumably due to a read being output based on some probability calculation, taking into considerat…
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I am trying to run parsnp for 330 bacteria genome (genome size ~2mb). The alignment seems to work properly. but it failed in the last step, the error message is pasted below.
Your help would be great…
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Just finished my rescheduled meeting. The format we agreed is:
The existing species_releases folder will have per species folders in it. When you're ready to start downloading you'll move the exist…
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### **Describe the bug**
I am trying to run the pipeline locally using "caper run chip.wdl -i "${INPUT_JSON}" --docker", but it fails on the line that reads:
> Job chip.read_genome_tsv:NA:1 exite…
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I'm getting an error with Parsnp at the last step creating the Gingr input file:
chaconas@chaconas-X10DRi:~/Programs/Parsnp-Linux64-v1.2$ ./parsnp -d /home/chaconas/Desktop/Projects/RDVParsnpTrial/Re…
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I tried wit 700 Mbp genome and got a fantastic results! Thank you!!
Now I'm now working on a plant genome of ~4 Gbp and got segmentation fault problem.
So if it is using too much memory, is there …