-
Hi!
We built a graph using 30 samples and mapping the other 1000 samples to the graph using `VG Giraffe`. I think `VG Augment` could add some of the variation from these 1,000 samples to the graph. …
-
I think it would be helpful to include in the sourmash documentation on how to interpret the charts and graphs that sourmash produces.
I may suggest
- adding information in a [side text](https://…
-
Schematize should be running as a component inside of JBrowse2. This is a separate repository at https://github.com/graph-genome/jbrowse-components which should check out Schematize repo as a submodu…
-
Hi, I'm new to this field, I was recently reading an article called "Phables: from fragmented assemblies to high quality bacteriophage genomes" and I wanted to reproduce some of the results, however, …
-
I'm trying to construct and index a whole genome variation graph of a relatively small genome containing ~17200 short regions. I constructed variation graphs for each region separately. I also generat…
-
**1. What were you trying to do?**
calling structural variation after mapping long-read data on whole genome pangenome graph
**2. What did you want to happen?**
create a VCF file which contai…
-
Hi
I'm using vg tools v1.50.1 "Monopoli"
I've produced a graph from 7 different genomes of the same species using minigraph-cactus.
I've used the indexes produced from minigraph-cactus with `…
-
I'm attempting an assembly (relatively heterozygous diploid genome; 5Gb haploid size; with Hifi, ONT & Hi-C).
In the directory 7-consensus, the uniting-popped fast = 7.3Gb; however the uniting.popp…
-
Dear Linxing,
Good afternoon. Thank you for this excellent paper and tool! I read this paper and shared it with my lab members. I have some questions about the application of COBRA:
1. For the…
-
In [graphs_coverage.R](https://github.com/BU-ISCIII/WGS-Outbreaker/blob/master/lib/graphs_coverage.R), lines 48 and 49, for some samples may not be the same number of values, causing it to fill the mi…