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I am trying to do gapfilling of a plant genome scale metabolic model, which has the IDs and reactions with the kegg nomenclature. To fill the reactions in my model, I generated two models, one with al…
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---
id: cobrapy
version: 0.22.1
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COBRApy/eccb9db64e44b41e026708957f12983e4bb1a24a/biosimulators.json
specificationsP…
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Hello,
I'm trying to use gapfill with my custom-made medium.
I've seen that file format for medium was like (compounds,name,maxFlux).
May I ask how I can get maxFlux numbers?
Thank you in adva…
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Dear Sir/Madam,
I have reconstructed a genome-scale metabolic network model using an orthology-based approach. However, "cofactors and vitamins" in the biomass equation could not be produced. There…
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## Update 2021-12-06
To join the nf-core community, please visit https://nf-co.re/join
The most important step is to sign up to the nf-core Slack, which is the hub of the community.
Once ther…
ewels updated
2 years ago
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### Description of the issue:
* This issue propose to include a `metadata` section to the yaml file specification in RAVEN
- Previously, a `metadata` section was introduced to the tailored `yaml…
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Hi, The package seems to be interesting, and would like to give a shot on my data. I have a sweet of prokaryotic MAGs and would like to run the GEM pipeline on it without starting from assembly and MA…
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- [x] Busqueda por persona Jueves 04/02/2021
- [x] Unificar criterios Viernes 05/02/2021
- [x] Descargar articulos en Dropbox
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It has been agreed that all original models' structures (version controlled or not) should be loaded from their corresponding `SBML` file. Currently, the version of the model can be obtained in severa…
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As one can see for the following Item, Senior Theses Items imported from submissions for certificate programs are members of multiple collections, one being the departmental collection, the other bein…