-
Expected Behavior
--------------------------------------------------------------------------
This request to add new genotype facilities comes from blueberry breeders at NCSU.
These are the name…
-
It's not very clear to me how exactly VG or Giraffe carries out SV calling (if it truly does). The tutorials mention how we can do genotyping using existing SV calls, but I was wondering if VG or Gira…
-
Hi
I am trying to run maegatk on my dataset. I have installed all the modules required as stated in the tutorial.
java, bwa, bedtools, freebayes, R (4.1.2, with data.table, Matrix, GenomicRanges, …
-
Hi,
Thank you for developing the excellent `TRGT` tool. I've read your paper "_Resolving the unsolved: Comprehensive assessment of tandem repeats at scale_". To gain a better understanding, I've als…
-
Expected Behavior
--------------------------------------------------------------------------
In the Search Wizard, a Genotyping Project is listed in both the Genotyping Project category as well a…
-
Hello,
I came across your tool/paper and found it really useful for our research. I was wondering if seGMM could also be used with imputed genotype array data? From what I understand, your focus h…
-
Qualimap needs an `ext.prefix`.
Additionally, Qualimap results are meant to be at the sample level, but are currently at the Library level. We need to use post-Library-merge BAMs as input for this …
-
Hi,
I am developing a module for genotyping antimicrobial resistance. I noticed that the Bio.pairwise2 module has been deprecated, so I wanted to switch to Bio.Align.PairwiseAligner. I couldn't fin…
-
**Describe the bug**
Hi, Im trying to run mgatk on a tenx run I did using the dogmaseq protocol.
When running:
`mgatk tenx -i ./PATHTO/atac_possorted_bam.bam -n mtMSC -o /PATHTOOUT/mtMSC -bt CB…
-