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I just got this running
Note that:
- ABF does not get to if proportion_cases is missinng
- polyfun_susie is missing the environment.
## Code
```
columnsnames = echodata::construct_colmap(m…
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Hi, guys:
I got the following error. I am using Windows 11 WSL, Ubuntu Linux.
![image](https://user-images.githubusercontent.com/26947455/132902214-793832cf-1cd1-4e79-ad85-5526a614fd20.png)
…
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#141
I updated my vtools to v3.1.2, python 3.7.6, King 2.2.4
As I see in this disussion, @gaow commented that KING is updated. But I'm getting the error exactly as mentioned in that ISSUE.
I…
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Hello,
I tried running Hawk, but I got stuck when running the `runHawk` script. I reran the `runHawk` script with the `-eux` bash flags (`bash -eux ./runHawk`) in order to check what is happening i…
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Hello,
I'm running `ieugwasr::check_access_token()` within an Rstudio container on our HPC. Can't seem to get the proper credentials. But this seems to work fine on my local desktop.
## Comman…
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I am contacting you because I am following the CNVRanger manual called "Summarization and quantitative trait analysis of CNV ranges" but I am unable to complete the final GWAS.
The problem is:
…
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Hi,
Some data-sets are not (yet) available through [MRInstruments](https://github.com/MRCIEU/MRInstruments). So I want to read them from a local copy. However, the `read_outcome_data()` can only read…
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Hello,
I have been trying so many times to reformat Summary Statistics and measure -rg between two GWAS summary stats, but I meet two errors :
[1] converted my summary statistics
*************…
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We need to create an online documentation/ tutorial about how to use gwas-sumstat-tools, so that both internal and external users can read and use gwas-sumstat-tools using CLI or UI. When our formatte…
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## 1. Bug description
PolyFun is not installed. Reinstall echofinemap with PolyFun? This will automatically restart R. (y/n):
Error in echofinemap::POLYFUN_install() : PolyFun is not installed.
…