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I spent some time looking at sources of provincial COVID-19 case counts today given the recent news about the InfoBase, and it's not looking great. I welcome suggestions and links if you know there's …
bfjia updated
3 months ago
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Since we are including both chosen name and common name in APIs (#1200 ), do you need a new field in misc/species_info.csv with both of these names?
Ex.
```
tax_id,short_name,long_name,organism,…
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**XBB.1.5 sublineage with S:H146K mainly in USA**
**Earliest Sample collection date:** 11/01/2022 [New York City, NY; EPI_ISL_15749691]
**Latest sequence:** 12/21/2022 [New York City, NY; EPI_ISL…
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I am performing filter module and receive this error
![image](https://github.com/danielpodlesny/samestr/assets/35288788/6fdb0d5b-9e68-48e1-a95b-5313968004e8)
I have checked that concerned microbe…
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One more previous singlet registered in #991 gets company.
EG.5.1.1--Pango#2426(JN.1.4+Orf8:S103L)
Breakpoint between 14890 and 15755
![image](https://github.com/sars-cov-2-variants/lineage-propo…
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meta1
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API: https://api.tst.glygen.org/glycan/search_init
Should not contain multiple entries for Pig, Rat etc
```
"organism": [
{
"name": "Human",
"id": 9606
…
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**Description of LB.1 + S:∆S31, R190T, ORF1b:G2068R**
**Sub-lineage of:** LB.1 (JN.1 + S:Q183H, S:R346T, S:F456L)
**Earliest sequence:** 2024-4-21, Qatar (sample from traveler to New York, USA)
**M…
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**Current Behavior**
Hello! We would like to use Nextstrain to perform the phylogenetic analysis for the SARS-CoV-2 genomes. We have been following the tutorial on [SARS-CoV-2 Workflow](https://docs.…
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An extraordinary BA.2 sequence was collected from Ontario, Canada, on August 2023. One of its most distinctive aspects was S:I651V, a 2-nucleotide mutation (though it only requires one). Another astou…