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danielpodlesny
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samestr
SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
GNU Affero General Public License v3.0
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- version -> 1.2024.09
#32
cschu
closed
1 month ago
1
moved to miniforge-based docker image
#31
cschu
closed
1 month ago
0
fix for N in kp2np
#30
danielpodlesny
closed
2 months ago
0
remove defaults channel from environment.yml
#29
cschu
closed
2 months ago
0
Request to Add a Sample File to the Repository
#28
yuzh321
closed
2 months ago
1
samestr filter
#27
tulikasriv26
closed
4 months ago
6
error message in samestr convert
#26
arimprove59
closed
4 months ago
8
Fix/dockerfile 20240423
#25
cschu
closed
6 months ago
0
Housekeeping/docker setup 20240419
#24
cschu
closed
6 months ago
0
module extract
#23
tulikasriv26
closed
5 months ago
7
Error with pinned conflicts
#22
slsevilla
opened
8 months ago
0
catch empty or unclassified taxonomic profiles and stop processing if…
#21
danielpodlesny
closed
8 months ago
0
2024.1 patch
#20
danielpodlesny
closed
8 months ago
0
Fix/summarize issues 20240205
#19
danielpodlesny
closed
8 months ago
0
Error in samestr convert
#18
simeonhebrew
closed
8 months ago
12
Fix/db check issue 20240129
#17
cschu
closed
9 months ago
0
Updates/sgb motus support
#16
danielpodlesny
closed
9 months ago
0
Refactor/cleanup main 20240116
#15
cschu
closed
9 months ago
0
Refactor/input management 20230413
#14
danielpodlesny
closed
9 months ago
0
samestr db
#13
tulikasriv26
closed
8 months ago
2
SameStr can only get one strain for a species from metaphlan database, right?
#12
liangyong1991
closed
1 year ago
2
reference genomes in samestr extract command
#11
qinglong89
closed
1 year ago
2
housekeeping: added github singularity container workflow
#10
cschu
closed
1 year ago
0
Do you have the command for reference genomes
#9
StickHu
closed
1 year ago
1
Convert getting stuck
#8
DenaEnnis
closed
1 year ago
4
index out of range
#7
StickHu
closed
1 year ago
2
How SameStr works?
#6
123chenshixin
closed
2 years ago
2
times for updates
#5
nick-youngblut
closed
1 year ago
6
Using samestr db with mpa_v30_CHOCOPhlAn_201901
#4
danielpodlesny
closed
2 years ago
10
after installation, when runing samestr it says ´Illegal instruction (core dumped)´
#3
huyue87
closed
2 years ago
2
Use of different marker genes databases
#2
kevinVervier
opened
2 years ago
4
Metaphlan version
#1
ShaneMota
closed
2 years ago
3