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According to this instruction https://github.com/dellacortelab/prospr/issues/12, I executed the following command to get pkl file from test2.seq, but I got the following error...
I already had databa…
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Thanks for the amazing work you put together. I'm trying to run openfold multimer branch with the following command
python3 run_pretrained_openfold.py \
./FASTA \
data/pdb_mmcif/mmcif_fil…
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No bin directory generated when compile from source code following the intrduciton from wiki, but the ffindex* binaries are in the directory ./build/lib/ffindex/src/, and other other binaries such as …
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Related to https://github.com/deepmind/alphafold/issues/280.
We are getting a disk write error after Jackhammer completes:
```
I0613 00:13:04.128991 139887425492800 utils.py:36] Started Jackhmm…
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How can I build my own database for HHblits?
First, how can I installed self-compiled HH-suite3 version includes MPI support? If this failed, could I just use "cstranslate -i %s -o %s -A %s/cs219.lib…
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So I have been trying for a while now to get RoseTTAFold to work with no actual success besides a 20 amino acid peptide that I tried just for the sake of trouble shooting my current issue.
The error…
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Hello everyone, I need your help, thank you!
1. I met problem when run ../run_e2e_ver.sh input.fa . or ../run_pyrosetta_ver.sh input.fa . , just Running HHblits and be stucked here. I found an empty …
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Thank you for your fantastic works, but I cannot run protein example.
I tried change directory name by `mv UniRef30 uniclust`, replace "DB_UR30="$PIPE_DIR/uniclust/UniRef30_2021_06" to "DB_UR30="$PI…
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hello，I am very happy to see that fastfold has added the multimer function, but I have a problem. When using the monomer function, I still cannot predict 5 models at once. Is there a solution for this…
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Hi @gahdritz,
Here are a bit more details about my error when adding --trace_model option while doing inferencing.
Here is the commands I run:
```
python3 run_pretrained_openfold.py \
/mnt…