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my query is multiple different protein, if it could be as the input directly for hhblits, or must I split them into many files with each sequence in it
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Hi，
When I run ’run_pyrosetta_ver.sh input.fa .’, the result gets two folders hhblits and log. I don't get five final models. Why is this ?
Thank you
lll16 updated
2 years ago
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Hi @gahdritz,
Here are a bit more details about my error when adding --trace_model option while doing inferencing.
Here is the commands I run:
```
python3 run_pretrained_openfold.py \
/mnt…
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Most of my runtime is lost in hhblits which runs on the CPU as opposed to the GPU. Has anyone tried using a GPU-capable equivalent (such as comer2) for this? Any thoughts/comments are appreciated.
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Dear author,
this is a good job, how did you get the msa features(L*256)？
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Hi @edwintse @mattodd
Last week the code of AlphaFold2 was published. Today EBI and DeepMind are releasing full structural proteomes predicted with this AI tool: https://alphafold.ebi.ac.uk/. Also…
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I installed openfold on a local server machine using recommanded installation steps
```
scripts/install_third_party_dependencies.sh
source scripts/deactivate_conda_env.sh
python3 setup.py insta…
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No bin directory generated when compile from source code following the intrduciton from wiki, but the ffindex* binaries are in the directory ./build/lib/ffindex/src/, and other other binaries such as …
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How can I build my own database for HHblits?
First, how can I installed self-compiled HH-suite3 version includes MPI support? If this failed, could I just use "cstranslate -i %s -o %s -A %s/cs219.lib…
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Dear author:
I try to test Fastfold, after followed the Installation Using Conda, (i think there are no command to test for a successful installation)
I run inference.py with the following code:…