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The `DnssecResolverApi` class extends the `ResolverApi` and creates its own `DnssecClient` with its own secure separate cache, but it never overrides the inherited `getClient()` function.
https://git…
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Hi,
I had a few errors subsetting bams, because my RNA bams reference has non-chr contigs (i.e. '6' , not 'chr6') and only the main chr contigs. My DNA bam has other contigs so I still want to run…
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Hello,
Thank you very much for a nice package!
My question is: can one use allelefrequencies data to calculate relative usage of different loci in a population or ethnic group? Does it actually …
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When making prediction using predict.py, here is the example input
,CDR3b,CDR3a,peptide,MHC,binder
0,CASSIRASYEQYF,CAGASGNTGKLIF,GILGFVFTL,HLA-A*02:01,1
1,CASSIRSTDTQYF,CAGSGGGSQGNLIF,GILGFVFTL,H…
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Teď když uděláte chybu ve swaggeru jako tady https://github.com/mild-blue/txmatching/pull/1235#discussion_r1243848161,
tak uvidíte jen tohle
```bash
File "/opt/conda/envs/txmatching/lib/python3…
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Hi,
Thank you for developing this tool which is quite easy to use!
I am wondering if SpecHLA could also be used to detect somatic HLA mutations since we have paired tumor and normal WES or RNA…
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Dear author, thank you for providing such an excellent HLA typing tool.
HLAscan has been working in our research all the time, but recently encountered problems in a batch of WES data.
On these …
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Hello
I'm trying to use polysolver to do HLA typing from exome data.
What does it means if I get 'winners.hla.nofreq.txt' instead of 'winners.hla.txt'?
I always get this filename as final output …
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I noticed that the collaborators are using the somatic VCF files to look for somatic mutations in the HLA genes. These genes are known to be problematic for alignments to the human reference genome si…
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After the external data update some of the sections in the tutorial are failing
eg
```
devtools::load_all()
dat_pheno %
as.data.frame() %>%
select(starts_with("B_110_")) %>%
head()
`…