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Sydney-Informatics-Hub
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Somatic-ShortV
GNU General Public License v3.0
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Gps dev
#16
calizilla
closed
6 months ago
0
Optimise the workflow to enable the use of gnomAD at 'getpileupsummaries' step
#15
calizilla
opened
7 months ago
0
gatk4_filtermutectcalls_make_input.sh and gatk4_calculatecontamination_make_input.sh Missing bamdir Setting
#14
DarioS
opened
2 years ago
0
Recent MuTect2 Versions Have Degraded Variant Calling Performance
#13
DarioS
opened
2 years ago
0
Inconsistent Directory Structure Expectations
#12
DarioS
opened
2 years ago
0
Duplicated Somatic SNVs in Final_Somatic-ShortV_VCFs Output
#11
DarioS
opened
2 years ago
0
gatk4_mutect2_check_pair.sh Uses Appending to Inputs File
#10
DarioS
opened
2 years ago
0
GATK4 Somatic PON Check Sample Output Format Missing Values
#9
DarioS
opened
2 years ago
0
GATK Module Load Missing In Rerun Script
#8
DarioS
closed
2 years ago
2
gatk4_getpileupsummaries_gnomad Resource Suggestions Probably From Failed Run
#7
DarioS
closed
2 years ago
1
Typo
#6
DarioS
closed
2 years ago
1
Mutect2 Make Input Scripts Pair Broken
#5
DarioS
opened
3 years ago
1
Mutect Make Input Detects All BAM Files Belongong to Person
#4
DarioS
opened
3 years ago
0
PON GenomicsDB Import Check Missing File Name
#3
DarioS
opened
3 years ago
0
GenomicsDB Input Make Script Missing from Guide and Incorrect Output File Format
#2
DarioS
closed
2 years ago
1
Special Variant Calling for HLA Genes Not Performed
#1
DarioS
opened
3 years ago
2