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From @tavinathanson:
> I'm fairly unclear right now about how best, when using cohorts, to use epidisco results; for example using epidisco neoepitopes rather than https://github.com/hammerlab/cohort…
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Hello everyone, especially hg38 reference genome users!
Now bcbio has hg38 support for almost 5 years!
http://bcb.io/2015/09/17/hg38-validation/
However, many user were still on GRCh37/hg19, be…
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I noticed that the py-ard implementation for converting v2 to v3 typings is not yet complete:
https://github.com/nmdp-bioinformatics/py-ard/blob/d43a035361cc90cef9bf0c98475ec90396b06a4f/pyard/db.py…
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The majority of reads (particularly over exons) in a region of chr17 appear to have MAPQ being zero.
…
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I have blasr (taken from SmrtAnalysis 2.3) installed but get the following error;
"ERROR: hitPolicy is not a valid option."
This causes an error, trying to run this step.
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Although
```sh
$ module load CBI hisat2
$ hisat2 --version
/software/c4/cbi/software/hisat2-2.2.0/hisat2-align-s version 2.2.0
64-bit
Built on parkch-desktop
Thu Feb 6 15:10:16 CST 2020
Com…
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Hello, we are using your database with HLA-typing tool xHLA (https://github.com/humanlongevity/HLA).
Base tool is not updated, but it produced fairly good results and have [script](https://github.c…
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thank you for developing so good tool to deal NGS-HLA data !
so i want to know HLA-DRB3/DRB4 modify is in your plan ?