HenrikBengtsson CBI-software issues

HenrikBengtsson / CBI-software

A Scientific Software Stack for HPC (CentOS oriented)

https://wynton.ucsf.edu/hpc/software/software-repositories.html

5 stars 2 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

jq: Configure also header include path and PKG_CONFIG_PATH

#123 HenrikBengtsson closed 2 months ago
0
HPC deployment: Distribute software stack via fast read-only file system

#122 HenrikBengtsson opened 2 months ago
0
nvtop

#121 HenrikBengtsson opened 3 months ago
0
ncdu: additional example

#120 HenrikBengtsson opened 5 months ago
0
SOFTWARE: visidata

#119 HenrikBengtsson opened 6 months ago
0
R: Make renv use file paths that are specific to also the Linux distribution

#118 HenrikBengtsson closed 6 months ago
4
Install R (< 3.0.0)

#117 HenrikBengtsson opened 6 months ago
0
Install R (<= 3.3.0) with zlib >= 1.2.10

#116 HenrikBengtsson closed 6 months ago
1
cpan-config: Generic CPAN configuration?

#115 HenrikBengtsson opened 7 months ago
0
plink2: Does it hijack all CPU cores by default?

#114 HenrikBengtsson opened 7 months ago
0
Cell Ranger 7.2.0 is available

#113 HenrikBengtsson closed 7 months ago
1
Wynton: Broken modules

#112 HenrikBengtsson closed 7 months ago
8
gistic2: Installation PREFIX not accessible by 'other'

#111 HenrikBengtsson closed 7 months ago
1
R: capabilities("tcltk") on Wynton's Rocky 8 nodes

#110 HenrikBengtsson closed 6 months ago
3
r-siteconfig: Linux distro-specific (...or ?)

#109 HenrikBengtsson closed 7 months ago
1
Closed source software

#108 HenrikBengtsson opened 8 months ago
0
CBI software that rely on RUNPATH (n=3)

#107 HenrikBengtsson opened 9 months ago
0
Software tools that install absolute paths (n=15)

#106 HenrikBengtsson opened 9 months ago
2
r: Set Java 1.8 as the default for Rocky 8; somehow it picked up Java 11

#105 HenrikBengtsson closed 9 months ago
1
CentOS 7/Rocky 8: Missing libraries

#104 HenrikBengtsson opened 9 months ago
1
Rocky 8: Undo distro-specific installs for htop, mc, and samtools?

#103 HenrikBengtsson closed 9 months ago
0
cutadapt: Specific to Linux distribution

#102 HenrikBengtsson opened 9 months ago
2
gatk: Exception in thread "main" java.lang.UnsupportedClassVersionError: org/broadinstitute/hellbender/Main has been compiled by a more recent version of the Java Runtime (class file version 61.0), this version of the Java Runtime only recognizes class file versions up to 52.0

#101 HenrikBengtsson closed 9 months ago
1
gistic2: Missing libraries on CentOS 7 and Rocky 8

#100 HenrikBengtsson closed 9 months ago
1
mutect: Requires Java 1.7

#99 HenrikBengtsson closed 10 months ago
1
Rocky8: Add scl-gcc-toolset/{9,10,11,12} modules

#98 HenrikBengtsson closed 10 months ago
1
Set default version and hide versions on some Linux distributions

#97 HenrikBengtsson opened 10 months ago
2
How to identify Linux distribution CentOS 7 or Rocky 8

#96 HenrikBengtsson opened 10 months ago
0
ROBUSTNESS: Assert that all paths set exist

#95 HenrikBengtsson closed 10 months ago
2
BUG: Non-existing LD_LIBRARY_PATH set in the 'r' module

#94 HenrikBengtsson closed 10 months ago
0
CentOS 7 -> Rocky 8 compatibility

#93 HenrikBengtsson opened 10 months ago
6
blat: check error

#92 HenrikBengtsson closed 10 months ago
0
bashdb: broken

#91 HenrikBengtsson closed 9 months ago
2
rstudio: $HOME/.config/rstudio/config.json becomes world writable

#90 HenrikBengtsson opened 10 months ago
0
R 4.3.0: Test installing on C4

#89 HenrikBengtsson closed 1 year ago
2
miniconda3-py39 & miniconda3-py310: Move to miniconda/3-py39, miniconda/3-py310

#88 HenrikBengtsson closed 1 year ago
1
SOFTWARE: AppScope

#87 HenrikBengtsson opened 1 year ago
0
GDAL: Compile and depend on a modern SQLite version

#86 HenrikBengtsson closed 1 year ago
2
CRIU: A checkpointing software

#85 HenrikBengtsson closed 1 year ago
1
TESTS: assert that is indeed the install target that is found

#84 HenrikBengtsson closed 9 months ago
0
TESTS: Add man page tests

#83 HenrikBengtsson opened 1 year ago
0
TESTS: Add test for help output

#82 HenrikBengtsson opened 1 year ago
0
TESTS: Missing version tests

#81 HenrikBengtsson opened 1 year ago
0
R: Detect when Conda is installed and active - if so, refuse to load the module

#80 HenrikBengtsson closed 1 year ago
7
Common linting tools

#79 HenrikBengtsson opened 1 year ago
0
RStudio Server: v2022.07.2-576 does not work in multi-tenant environments

#78 HenrikBengtsson closed 1 year ago
2
rstudio-server: installation issues

#77 HenrikBengtsson closed 1 year ago
1
miniconda3-py39: secure ~/.conda/ file permissions on load(?)

#76 HenrikBengtsson opened 1 year ago
0
Move away from aliases to functions

#75 HenrikBengtsson closed 1 year ago
0
README: Add requirements

#74 HenrikBengtsson closed 1 year ago
0