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Hello,
I have a custom Kraken2 database that I have created from domain amino acid sequence (via --protein option) and classifying microbiome data using the translated search feature. I'm trying to…
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I ran classify with both options for coverage and tie-lca by mistake, and the program exits without any explanation. We should not accept the two options together and return a clear error message.
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Hey all,
I noticed that the LowestCommonAncestorNoParent solution is a little more complex than it needs to be. The creation of a custom class to return values seems a little over the top, no?
What …
ghost updated
8 years ago
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* [ ] expected.digrams.assignment_lca.txt
* [ ] expected.digrams.kmer_lca.txt
* [ ] expected.digrams.krakenlike.txt
* [ ] expected.digrams.lossless.txt
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**User story**
As a Cardinal team member, I would like the ability to re-process tubes that have previously been 'banked' (using the Cardinal cell banking pipeline), and send them down the Cardinal l…
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### Description
@gcielniak suggested to adopt https://github.com/LCAS/bacchus_internal/blob/main/bacchus_bringup/src/check_topics_gui.py for a simple customised GUI for Hunter (and dogtooth) to give …
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would be nice to be able to export the key bits of the lineage spreadsheet from an LCA database.
ctb updated
11 months ago
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Is there a way to retrieve an audio file from the S3 bucket using the Call ID? We are using the stack to stream to our own client and arer missing this capability. I don't know if I am missing somethi…
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**Which operating system and Python version are you using?**
Windows and Python 3.12.4
**Which version of this project are you using?**
BW2Regional version (0, 7, 'DEV2')
**What did you do?**
…
nrogy updated
4 weeks ago
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It would be nice to have better error messages when doing scenario LCAs.
For example, there's certainly something wrong with my scenario difference file, but it is pretty difficult to understand what…