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We are currently using the purity facets result to annotate the maf, but I believe we should be using the hisens result instead. looks like the clinical impact runs are run using hisens, and for annot…
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`gc.heap.generation` output for now
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bikin apps sulit loh
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`chr17 31977413 Minda_52 N . PASS SVLEN=26715;SVTYPE=DEL;SUPP_VEC=PB_r_167,ILL_MantaDEL:233235:1:2:0:0:0,PB_severus_DEL2746,ONT_severus_DEL3107,PB_ID_32124_2,ILL_2432545328:2,ILL_gridss252fb_8676h,ON…
jzook updated
2 weeks ago
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Today a OOM exception isn't really actionable. It shows me where it tried to allocated and blew up, which is helpful.
But I dunno how much memory it tried to allocate. How much was available, etc.
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Hi,
I ran Numbat with WGS CNV as input; however, it always returns the error message 'seqnames' cannot contain NAs.
I don't have any NAs in count_mat_ATC2, df_allele_ATC2, or the segs_consensus …
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Loh et al argue for the idea of [compressive genomics](https://www.nature.com/articles/nbt.2241) and follow up with ideas of [Compressive acceleration](https://dl.acm.org/doi/10.1145/2957324).
The…
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`chr6 90423202 Minda_123 N . PASS SVLEN=291765;SVTYPE=DUP;SUPP_VEC=ILL_MantaDUP:TANDEM:117870:0:1:0:0:0,ILL_gridss115bf_2638h,PB_severus_DUP6249,ONT_severus_DUP7206,PB_ID_42852_2,ONT_ID_67254_2,PB_r_…
jzook updated
1 month ago
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1. Open the F# codebase
2. Open some F# compiler files (this is just to get memory usage up to where it normally is when working in the compiler)
3. Open `ComparersRegression.fs` (nearly 60k LoC)
4…
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### Current Behaviour
If you didn't complete any of Loh'atu's quests, you will get the following gossip and dialog options.
![image](https://user-images.githubusercontent.com/22718174/170881337-c4…