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ScopeReaders shouldn't necessarily be limited to microscopy (though the name partly suggests as much). We should add a directory called "Microscopy" above all the SPM, EM, etc. that we have. This will…
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I have just read the paper cited at the end, and it convinced me about the potential of monolinks as a source of experimental information regarding surface accessibility. As suggested there, this may …
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ZipROFS is exactly what we need.
We have tons of mass spectrometry data, each record is a Zip containing several files.
However, they are very large, some have several Gigabytes.
I measure th…
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Dear FragPipe team,
thanks a lot for creating and maintaining this wonderful tool for mass spectrometry!
My problem is based on the open search. I am used to get unmodified peptides as the major …
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In your manuscript entitled "Triqler for Protein Summarization of Data from Data-Independent Acquisition Mass Spectrometry" you state that:
"The pipeline generated decoys for FDR calculations, whic…
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Hi MSGF+ Team
Thanks for your work in MSGF+.
** I get mass spectrometry data from Bruker TimsTOF and want to do database search using MSGF+.**
**At first, I convert the *.d files into mzML. …
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Hi there,
First of all, thanks for your work on this package! I make heavy use of it in my mass spectrometry database parser package.
I recently was asked if I could also allow users to provide SM…
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Hey everybody,
this sounds like an interesting project and file format. I am here to ask if you think this would be a great addition to MZmine, which is also written in Java and used by thousands …
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MSID: 102151
Version: 1
Preprint DOI: https://doi.org/10.1101/2024.08.06.606815
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-h…
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Hi,
this is for version plotms 5.1.
In positive and negative ionization mode the electron mass should be observed.
Reason is that modern accurate mass spectrometers are "accurate" enough
to mea…