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Hello,
I trying to figure out my way in to get to know atlas.
And currently I'm running the tutorial data set on a server. and run it generously for 4 data sets
atlas run all --resources mem=500 …
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I have obtained bins with a gene-based binning, these genes are generally short (
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@jbeezley @subdavis @jeffbaumes @wdduncan @dwinston @dehays
Tagging you all as I'm not sure how you all will want to implement this.
I'm including tables that map some of the terms on the website…
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"""
3. In the comparsion, all metrics must be carefully described, as well as the sizes of assemblies, numbers of contigs, N50, etc.
"""
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# Critical Assesment of Metagenome Interpretation (CAMI)
CAMI is an open challenge for meta-omic's programs where the developers of said programs test out their programs on multiple different dataset…
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I have a "raw" ONT bam file (de multiplexed with adaptors trimmed using ONT's new Dorado base caller)
I wanted to to a quick assembly with flye but am running into this issue that I can't find docu…
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Dear Kajitani,
After reading the paper and the great performance of this software I am trying to use MetaPlatanus for an hybrid assembly of human gut metagenomes. I installed the conda version in …
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Thank you for developing this tool!
Makeblastdb seems to fail because no plasmids could be detected (see full log below). The reason is that `./intermediate_files/ERR4163138_contigs.cycs.fasta` is …
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### Description of feature
Decided I wanted to try and bin my data using Vamb, which isn't in the pipeline yet. Would be a useful feature to be able to supply a csv (or directory?) of bins and jump d…
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Dear developer,
Thank you for your pipeline!
I have a question regarding quant_bins module. I first thought of this module as an improved method for metagenomic read recruitment, able to comput…