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Dear miRTop colleague,
We are inviting you all to participate in an isomiR research project. We have been talking for some time about isomiR naming conventions. One of the potential challenges wi…
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Hello, I want to use PROmiRNA for mouse miRNA TSS prediction. While running the program, I bumped into problem like these. I wonder if it is because using the wrong -s file (gene start region gff), an…
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It looks like FASTP is not able to detect *automatically* the adapter at all for miRNA-seq data.
For example, FASTP is not able to detect *automatically* the adapter in the SE FASTQ file from https…
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> ######## Download mature miRNA data #######
> gdcRNADownload(project.id = 'TARGET-NBL',
+ data.type = 'miRNAs',
+ write.manifest = FALSE,
+ …
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cc: @lpantano @gurgese @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC
I'd like to discuss the last columns since probably would need more time, and before everybody …
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## Data for testing
```git
an
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* x-axis: developmental time (expression ontology)
* y-axis: miRNA enrichment
Need to:
- [ ] Parse times from ZFIN WT Expression ontology terms.
- [ ] associate times with enriched miRNAs
Go …
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Hi all again!
cc: @lpantano @gurgese @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC
I will start a issue column type at a time. Let's see if that makes easy to ge…
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Hi!
I tried to use miRge2.0 for microRNA sequencing data analysis. I used the command below and the following message came up:
`miRge2.0 annotate -s /path/to/input_file.fastq -d miRBase -pb /path/to…
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*When using the follwing code:*
```
####### Download mature miRNA data #######
gdcRNADownload(project.id = 'TCGA-BRCA',
data.type = 'miRNAs',
write.manife…