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We have an extra unused parameter in the get_ll_representation for each DemographicEvent class. This is needed because stdpopsim will uses this until msprime 1.0 is released. Stdpopsim should then tra…
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It seems that the current feems installation instructions are (a) incomplete and/or (b) incorrect. In particular, I have found that with current conda installations (e.g., miniconda), the installation…
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It would be nice to have a function to calculate the selection test described in the Relate paper (p.16 of supplement) for mutations in a given tree. Or perhaps this is something that could be added t…
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```
def get_introgressed_tracts(ts, chr_name, src_name, tgt_name, output):
"""
Description:
Outputs true introgressed tracts from a tree-sequence into a BED file.
Arguments:…
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I have all permission to share our scripts to simulate genome with variation (piecewise) of selfing and dormancy. @jeromekelleher, let me know how to proceed. Since it's all rescaling we build python …
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Consider a GenericIM() model. The ancestral population with size NA should not exist in the SLiM simulation after time T. It currently does (without affecting N1 or N2), and this adds needless computa…
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Dear all,
I am very sorry as this might appear as a very trivial issue. I am currently trying to install _momi_ from pip in the WSL (windows subsystem for Linux) partition of my Windows 10 machine…
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Hello,
I am running ReLERNN on a mac with an M1 chip and suspect that this might be the main cause of the following error when running the example file. Is there an update for MacOS instillations w…
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Lots of nice new ideas are coming up on slack. Two initial entries for the FAQ could be
* #663
* coordinate system conventions for stdpopsim/msprime/SLiM/VCF/BED/GFF3
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At the moment we use `requirements.txt` for creation of environment for development and usage. Although its quick to get started with pip, I think its a good idea to start using `environment.yml` for …