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popgenmethods
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momi2
Infer demographic history with the Moran model
GNU General Public License v3.0
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readthedocs broken (development version)
#73
jackkamm
closed
4 months ago
1
Questions about the N_e values in momi2
#72
Github-Yilei
opened
4 months ago
1
Model choice--AICc
#71
AndreMonc
opened
10 months ago
2
The query for momo.read_vcf whether need so many memory (1.2t)? Is it normal?
#70
baiwenhuim
opened
1 year ago
0
Failing to build momi on MAC
#69
Ephraim-usc
opened
1 year ago
1
ValueError: I/O operation on closed file
#68
tobitliyandja
opened
1 year ago
0
Advice on modelling one pop over time.
#67
Hjorvik
closed
1 year ago
2
ValueError: not enough values to unpack (expected 2, got 0)
#66
XiaXiaTianTian
opened
1 year ago
1
No BED provided, will need to specify length manually with mutation rate
#65
XiaXiaTianTian
closed
1 year ago
2
Difference in magnitude between expected SFS and SFS from data
#64
trevorcousins
opened
1 year ago
1
Convert dict to momi.sfs object
#63
trevorcousins
opened
1 year ago
6
Bug in fit_within_pop_diversity()
#62
trevorcousins
closed
1 year ago
1
scipy.linalg pinv2 - deprecated
#61
trevorcousins
closed
1 year ago
1
simulate_data() doesn't work with lambda params
#60
jackkamm
opened
1 year ago
0
momi.events.DemographyError
#59
pengyan19
opened
1 year ago
10
Can momi2 deal with hybridization?
#58
SC-Duan
opened
1 year ago
1
deleted
#57
huanglei-artificium
closed
1 year ago
0
Momi and multiprocessing
#56
noscode
closed
1 year ago
2
Better error message for ascertained population with 1 allele
#55
jackkamm
opened
2 years ago
0
pop was already removed by previous move_lineages
#54
Github-Yilei
closed
1 year ago
2
Error during likelihood evaluation for data from the paper
#53
noscode
closed
2 years ago
2
Potential issue with gcc when installing momi on a Windows10 WSL
#52
ChrystelleDelord
opened
2 years ago
1
Improve build robustness to missing numpy
#51
jackkamm
opened
2 years ago
0
Builds failing on recent versions of macOS
#50
jackkamm
opened
2 years ago
0
Improve readthedocs.io API navigation
#49
jackkamm
opened
2 years ago
0
Support the Demes specification
#48
jackkamm
opened
2 years ago
0
Switch from autograd to jax
#47
jackkamm
opened
2 years ago
0
Compute allele counts error
#46
mahmood225
opened
2 years ago
3
Wrong KL value returned by optimize
#45
yss1
opened
3 years ago
5
plotting issue
#44
XuexueLiu
closed
2 years ago
1
Unable to install it
#43
huanglei-artificium
closed
3 years ago
3
ongoing migration
#42
glaudelrio
closed
2 years ago
2
MemoryError: Unable to allocate 4.18 TiB...
#41
Erythroxylum
closed
2 years ago
2
VCF files reading error: fetch requires index
#40
AlexLlanesQuevedo
closed
2 years ago
2
Update to work with networkx 2.4+
#39
jackkamm
closed
3 years ago
0
Update dependency on networkx
#38
alanaw1
closed
4 years ago
1
Error when computing allele counts
#37
deponent-verb
closed
4 years ago
2
Document convert.sfs_from_dadi
#36
jackkamm
closed
2 years ago
0
Cryptic description of p_missing.
#35
Hjorvik
closed
4 years ago
3
Feature request: Support ANGSD format SFS
#34
biozzq
opened
4 years ago
2
Support networkx 2.4+
#33
jackkamm
closed
3 years ago
4
Only build for Python 3.7
#32
jackkamm
closed
4 years ago
0
Error importing momi
#31
cae803
closed
4 years ago
2
Jupyter notebook kernel dies
#30
mgsantos66
closed
2 years ago
1
momi2 exception, growth parameters
#29
plibrado
closed
4 years ago
7
Error computing allele counts.
#28
Hjorvik
closed
4 years ago
4
How to determine the best model
#27
silvewheat
closed
5 years ago
1
Saving demographic plots
#26
isisarantes
closed
5 years ago
1
ImportError: /miniconda3/lib/python3.6/site-packages/../../libgsl.so.23: undefined symbol: cblas_dasum
#25
kevinmneal
closed
5 years ago
7
Estimating migration Kernel has died
#24
isisarantes
closed
5 years ago
6
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