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I'm not sure if this should be reported as an issue with diamond, but any advice would be appreciated!
Attempting to compile diamond on ARM based raspberry pi 400 (which is just raspberry pi 4) f…
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Nachdem Manfred mir die restlichen Daten geschickt hat, hier mal ein kleines Update:
Es gibt jetzt 66 (BL) + 29 (HD) = 95 Patienten. Von den 66 BL Patienten gibt es zu 55 ein FU File.
Nimmt man HD u…
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Hello, I am following the [preprocessing notebook](https://github.com/YosefLab/Cassiopeia/blob/refactor/notebooks/preprocess.ipynb) in the refactor branch with my own GESTALT data. I believe it has be…
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There are a couple of places where the gradients are enabled
https://github.com/mortonjt/garfunkel/blob/master/deepblast/alignment.py#L72
https://github.com/mortonjt/garfunkel/blob/master/deepblast/…
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The new function works well and I have been able to run up to 2000 sequences against a small reference database (50 sequences). However, with 5000 or 9000 sequences the program stops again with memor…
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### Setup
I am reporting a problem with Biopython 1.8, Python version 3.7 , and operating
system as follows:
3.7.8 | packaged by conda-forge | (default, Jul 31 2020, 02:25:08)
[GCC 7.5.0]
CP…
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I am skimming through the source code because the documentation (`fasta_guide.pdf`) does not give good explanations. However, it will be much more helpful if you @wrpearson could provide relevant code…
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> Thanks for your feedback.
>
> **A short answer**
> Examining two sequences of the same length is a requirement for integrating GateKeeper with any global pairwise alignment algorithm (e.g., Need…
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For https://github.com/Homebrew/homebrew-cask-fonts/pull/2188, I renamed a file and also edited it. Here's how delta shows the diff (with `diff-highlight` emulation and a couple extra customizations, …