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Hi,When I was running this function, I encountered the following error, I checked my motif matrix and gene name, but I did not find a number beginning, I feel very confused, can you give me the answer…
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Hi @AvantiShri
```
Computed threshold 2.1903742329729723
378 coords remaining after thresholding
After resolving overlaps, got 378 seqlets
1 activity patterns with support >= 200 out of 3 possib…
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**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?**
- [x] Yes
…
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Hello,
I would like to train a supervised model with known antigen specificity, then use that model to classify new TCR sequences as potentially targeting certain antigens. I have followed along wi…
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I've just installed singularity and nextflow, and running into difficulties executing the example data set, caused by: Missing output file(s) `*.tsv.gz` expected by process `scover`
singularity ve…
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In our group we are using merlin to simulate a new topology. We have successfully tested the topology and it works correctly but we have found a couple of issues that we can't seem to track down:
1…
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## Feature request
Requires valid distance metrics for crystal structures and polymers that encode chemo-structural novelty and polymeric novelty, respectively as well as structure-based regressi…
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Under the latest version of sklearn (0.24.2) it appears that the MLP modules shifted around a bit. As a result under the latest version, I got the following error when trying to run mCaller.
```
M…
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Hello and thanks for **turboGliph**! Here are a couple of issues that I have noted and am trying to understand. I use the included package dataset for reproducibility.
```
library(turboGliph)
uti…
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I have not been able to find some imported modules in the python scripts located in the buildTRs/lib directory. I could not find them on PyPi or deposited in ChaissonLab github page.
I am specifica…