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Hello,
I have some CAGE sequencing data from oil palm. The reads were mapped to the genome and I have the alignment BAM file.
I load my BAM files with CAGEexp. Then, I have problem running getCTSS.
…
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Hi,
I am trying to run [Tutorial_new_model_training
](https://github.com/atomicarchitects/phonax/blob/main/Tutorial_new_model_training.ipynb) but getting an error in step 3 [construct and initialize…
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Hi, thanks for the nice tool! I really enjoy using it. I just have a question about lifting over the non-coding genes.
I'm using liftoff for a model species, and I lifted over the annotation from t…
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In two independent settings today I was asked about approaches to modeling discards. The section in our handbook on discards, which @chantelwetzel-noaa recently expanded, has lots of really valuable d…
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Run this:
```library(roleR)
## init_type may be bridge_island or oceanic_island
p
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Hi, Allan.
Just reporting that I have been facing some difficulties to calculate alkalinity values using the Extended UNIQUAC. The other models I have tested worked fine (HKF and Pitzer, basically)…
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It was suggested during the authors' review of the mirGFF3 paper that the mirGFF3 file should have the annotation database used for the initial step of detection, annotation, and quantification as man…
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**Are you using the latest release?**
funannotate v1.8.17
**Describe the bug**
When I run funannotate predict I get an error
[Oct 15 05:17 PM]: Training Augustus using BUSCO gene models
Error: …
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Hi,
Can TOA use for non-model animal functional annotation directly or with some modification ?
Best,
Kun
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From @matthiaskoenig :
Most of the specification describes how to define the geometries and the domains. I miss a bit the description how this will actually all come together in a simulation of a co…