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The difference between these two files is that in 1hbx_reversed, the nucleotides in chain C go from -16 to 10 while in 1_hbx_original, the nucleotides for chain C are in descending order from 10 to -…
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After examining the output of RhoTermPredict, I am curious as to why it appears there are two different coordinate notations being used. The palindromic sequences (for example, ATAT) are reported as N…
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**Steps to Reproduce**
1. Launch “Ketcher” and switch to the Macro mode
2. Open this file [Macro sequence.zip](https://github.com/epam/ketcher/files/14652359/Macro.sequence.zip)
3. Go to the Sequ…
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Hi,
bamCoverage "--MNase" is a good argument, but it only counts 3 nucleotides at the center of each fragment. Is it possible to add another argument to specify an offset with respect to fragment cen…
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[2021-07-20 01:35:45.238] [jointLog] [warning] Entry with header [chr7] was longer than 200000 nucleotides. Are you certain that we are indexing a transcriptome and not a genome?
[2021-07-20 01:35:4…
hsi88 updated
3 years ago
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**Steps to Reproduce**
1. Switch to Macro - Sequence mode
2. Load from file (unzip first) : [Possible to drop selection.zip](https://github.com/epam/ketcher/files/14929441/Possible.to.drop.selecti…
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Convert dataset to a single CSV with columns `seq` and `label`, where `label = H | I | C` for HIV, Influenza and COVID respectively.
Truncate each sequence to be 8k nucleotides long
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The annotation_preprocessing new pipeline does not filter out the contigs less than 1000 nucleotides
The old pipeline was doing it so we need now to do it manually if there are contigs of less than 1…
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Hello,
I have been mapping Rhapsody WTA libraries using STARsolo with great success using the suggestions [here](https://github.com/alexdobin/STAR/issues/1111#issuecomment-1059029529) however, BD jus…