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Is this really a "process" or is it only a phenotype that is a consequence of problems with
rRNA processing/ ribosome biogenesis?
The gene products annotated to it (only ~24 experimental appear to be…
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Hello, msbentsen,
I have some questions when using **TOBIAS** for my ATAC-seq data analysis, I read the docs on TOBIAS Github, but still confused.
My atac-seq analysis propose is finding different T…
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## Bi-weekly meeting memo
0. Files that Shannon will share to Tao
- ATAC-seq datasets: fastq
- variant dataset: vcf
- packages: R Bioconductor, ChIPPeakAnno, ChipSeerker
1. make the footprint f…
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I.e. any switch that tracks which k-mer sequence is present in the signature?
Thank you.
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**Tldr: How would I put coveragebrowser or CoveragePlot() on a shiny app to share online?**
**More detailed explanation:**
I am trying to build a shiny app that visualizes ATAC tracks for differen…
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Following on from #16603 I would like to request:
1. chromatin looping
is_a ds_DNA loop formation
is_a chromatin remodelling
2. transcriptional activation by chromatin promoter-enhancer loop…
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Hi timoast
I want to know if there is any way in Signac to implement this paper (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7299161/#SD2), Fig 2-c and Fig 5-g Analysis method.
Thanks.
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I am trying to make a shiny app that visualizes the tracks using the CoveragePlot() function from Signac. Unfortunately, even though my shiny app works perfectly well locally, there seems to be an iss…
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Hello, I am trying to analyze my bulk ATAC samples but get the attached errors. These are ATAC from human donor tissues, so I am trying to train the model which is where I get the error. I am using …
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I have been successful integrating 3 ATACseq samples using your vignettes and other posts on github.
However, using the final integrated object I get an error when using coverageplot(integrated)
Thi…