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I receive this error when loading MS Amanda result files created with SearchGUI:
```
[...]
File import completed. 496590 first hits imported (6689561 total) from 579600 spectra.
[496177 first hi…
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```
> What steps will reproduce the problem?
We loaded 12 result files produced by Searchgui (MS-GF+) into PeptideShaker.
After about 2 hours of analysis, with PeptideShaker at more than 80% of the
…
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Hello @acesnik ,
I am opening this issue here so I can share some thoughts of what I perceive as some issues with the format of the output fasta file from Spritz to be used in FragPipe as initiated…
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Starting from the commented tests in https://github.com/OpenMS/OpenMS/blob/bdfcd98b1c9a5ee10e51146218ae3d8c40c914a8/src/tests/topp/THIRDPARTY/third_party_tests.cmake#L269 (which seemingly outdated par…
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I am trying to direct-search HeLa raw file in DIA-NN 18. There is no searched data at the end. Below is the report.log which says
[25:57] Loading run D:\Jae_DIA_practice\1_200 ng HeLa digest (3 file…
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Hello, I would like to clarify what would be a better way to proceed with the PTM search. In case I have 10 different modifications (some on the same amino acid, some on the different, I expect only o…
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Hey guys,
I use MSGF+ quite often, while ive been heavily using the one developed in 2014 for my analysis I ran into a problem with a dataset which kept breaking MSGF+ the minute it starts searchin…
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hi
I am using fragmentation analyzer ver 1.5.13. earlier version of the same (1.5.11)had an option to select the fragment ion type (right click on the top tab) when we do a fragment ion probability m…
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This is rather a feature request than an issue. It would be nice if the PSM table could be string-queried-filtered (not just sorted) by ProteinID, Entry Name and protein Description. This feature wou…
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Dear developers,
I am unsure why the maximum variable modification option is not working. Do you have any suggestions? I am also not getting any results when running the software. What could be the …