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Hello,
For GO annotations and network representation (we're using esyN - www.esyn.org), we would find it very useful to have a set of PRO entries for S. pombe complexes. We maintain a list of GO ce…
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Remove some redundant Malacards which already have a PomBase entry.
I am finding quite a few misassignments in these I trust the ones we have checked ourselves more, so it would be good to fi…
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We have some expression files
[https://www.pombase.org/data/releases/latest/misc/gene_expression_table.tsv](https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.pombase.org%2Fdat…
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Or maybe an error?
(From https://github.com/pombase/canto/issues/2802#issuecomment-1970616095)
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https://www.pombase.org/reference/PMID:20299449
to capture hht1/2/3 H3-K9 -> chp1/2
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UniProtKB:Q9UTR8 | red1 | part_of | GO:0000178 exosome (RNase complex) | ECO:0007826 IEA | GO_REF:0000118 | PANTHER:PTHR21563:SF3 | 284812 Schizosaccharomyces pombe (strain 972 / ATCC 24843) | Tr…
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https://www.pombase.org/gene/SPBC13G1.05
NOT
GO:0045724 | positive regulation of cilium assembly | IEA with PTHR13317:SF4 | GO_REF:0000118
Note to self, add taxon restriction
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I use this AmiGO a lot, but its use is restricted by the fact that you can only use it on whole genome annotation, not on lists.
I think it uses a java library and so presumably for us, would no…
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changed things a lot, especially for IEA and ISO
vw253-mbp13196:Desktop vw253$ cut -f 7 gene_association.pombase\ \(7\) |sort |uniq -c
1 !URL: https://www.pombase.org
1 !contact: helpdesk…
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Sessions with both style:
from https://github.com/pombase/website/issues/1348
current list here:
https://github.com/pombase/curation/issues/3365#issuecomment-1302162427